biobb

• configuration package
  • Submodules
  • configuration.settings module
    • ConfReader
      • ConfReader.first_level_keys
      • ConfReader.get_paths_dic()
      • ConfReader.get_prop_dic()
      • ConfReader.get_working_dir_path()
    • trans_galaxy_charmap()
• generic package
  • Classes
    • BiobbObject
      • BiobbObject.__init__()
      • BiobbObject.check_arguments()
      • BiobbObject.check_init()
      • BiobbObject.check_properties()
      • BiobbObject.check_restart()
      • BiobbObject.copy_to_host()
      • BiobbObject.create_cmd_line()
      • BiobbObject.create_tmp_dir()
      • BiobbObject.create_tmp_file()
      • BiobbObject.execute_command()
      • BiobbObject.get_main()
      • BiobbObject.remove_tmp_files()
      • BiobbObject.run_biobb()
      • BiobbObject.stage_files()
• tools package
  • Submodules
  • tools.file_utils module
    • change_dir()
    • check_argument()
    • check_complete_files()
    • check_properties()
    • copy_to_container()
    • copy_to_host()
    • copytree_new_files_only()
    • create_cmd_line()
    • create_dir()
    • create_incremental_name()
    • create_name()
    • create_stdin_file()
    • create_unique_dir()
    • create_unique_file_path()
    • get_doc_dicts()
    • get_logs()
    • get_logs_prefix()
    • get_working_dir_path()
    • human_readable_time()
    • launchlogger()
    • log()
    • rm()
    • rm_file_list()
    • search_topology_files()
    • unzip_list()
    • unzip_top()
    • write_failed_output()
    • zip_list()
    • zip_top()
  • tools.test_fixtures module
    • compare_dictionaries()
    • compare_hash()
    • compare_ignore_first()
    • compare_images()
    • compare_line_by_line()
    • compare_object_pickle()
    • compare_pdb()
    • compare_size()
    • compare_top_itp()
    • compare_xvg()
    • compare_zip()
    • equal()
    • equal_txt()
    • exe_success()
    • not_empty()
    • raises()
    • test_setup()
    • test_teardown()
    • validate_json()