Index

_

__init__() (generic.biobb_object.BiobbObject method)

B

biobb_global_properties (in module biobb_common)

BioBBGlobalProperties (class in biobb_common) BiobbObject (class in generic.biobb_object)

C

change_dir() (in module tools.file_utils) check_argument() (in module tools.file_utils) check_arguments() (generic.biobb_object.BiobbObject method) check_complete_files() (in module tools.file_utils) check_init() (generic.biobb_object.BiobbObject method) check_properties() (generic.biobb_object.BiobbObject method) (in module tools.file_utils) check_restart() (generic.biobb_object.BiobbObject method) compare_dictionaries() (in module tools.test_fixtures) compare_hash() (in module tools.test_fixtures) compare_ignore_first() (in module tools.test_fixtures) compare_images() (in module tools.test_fixtures) compare_line_by_line() (in module tools.test_fixtures) compare_object_pickle() (in module tools.test_fixtures) compare_pdb() (in module tools.test_fixtures) compare_size() (in module tools.test_fixtures) compare_top_itp() (in module tools.test_fixtures) compare_xvg() (in module tools.test_fixtures)

compare_zip() (in module tools.test_fixtures) configuration.settings module ConfReader (class in configuration.settings) copy_to_container() (in module tools.file_utils) copy_to_host() (generic.biobb_object.BiobbObject method) (in module tools.file_utils) copytree_new_files_only() (in module tools.file_utils) create_cmd_line() (generic.biobb_object.BiobbObject method) (in module tools.file_utils) create_dir() (in module tools.file_utils) create_incremental_name() (in module tools.file_utils) create_name() (in module tools.file_utils) create_stdin_file() (in module tools.file_utils) create_tmp_dir() (generic.biobb_object.BiobbObject method) create_tmp_file() (generic.biobb_object.BiobbObject method) create_unique_dir() (in module tools.file_utils) create_unique_file_path() (in module tools.file_utils)

D

dict() (biobb_common.BioBBGlobalProperties method)

E

equal() (in module tools.test_fixtures) equal_txt() (in module tools.test_fixtures)

exe_success() (in module tools.test_fixtures) execute_command() (generic.biobb_object.BiobbObject method)

G

get_doc_dicts() (in module tools.file_utils) get_logs() (in module tools.file_utils) get_logs_prefix() (in module tools.file_utils) get_main() (generic.biobb_object.BiobbObject class method)

get_paths_dic() (configuration.settings.ConfReader method) get_prop_dic() (configuration.settings.ConfReader method) get_working_dir_path() (configuration.settings.ConfReader method) (in module tools.file_utils)

H

human_readable_time() (in module tools.file_utils)

L

launchlogger() (in module tools.file_utils)

log() (in module tools.file_utils)

M

module configuration.settings tools.file_utils tools.test_fixtures

N

not_empty() (in module tools.test_fixtures)

R

remove_tmp_files() (generic.biobb_object.BiobbObject method) rm() (in module tools.file_utils)

rm_file_list() (in module tools.file_utils) run_biobb() (generic.biobb_object.BiobbObject method)

S

search_topology_files() (in module tools.file_utils)

stage_files() (generic.biobb_object.BiobbObject method)

T

test_setup() (in module tools.test_fixtures) test_teardown() (in module tools.test_fixtures) tools.file_utils module

tools.test_fixtures module trans_galaxy_charmap() (in module configuration.settings)

U

unzip_list() (in module tools.file_utils)

unzip_top() (in module tools.file_utils)

V

validate_json() (in module tools.test_fixtures)

W

write_failed_output() (in module tools.file_utils)

Z

zip_list() (in module tools.file_utils)

zip_top() (in module tools.file_utils)